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emo-bon / MetaGOflow

MGnify oriented implementation for the Marine Genomic Observatories oriented pipeline, developed in the framework of an EOSC-Life funded project
https://metagoflow.readthedocs.io
Apache License 2.0
7 stars 8 forks source link

interproscan cpus fine tuning #9

Closed jprmachado closed 1 year ago

jprmachado commented 1 year ago

fix #7

do not merge this PR

note: This branch needs to tested before squash and merge this branch.

edit: Still not ready to merge a full run to see if its working correctly, but the interproscan can now be initiated with a separated number of cpus

The website containing the schemas is currently down, this make impossible to run the workflow. To solve this issue as a temporary solution the edamontology was replaced with a direct load from github e.g. https://raw.githubusercontent.com/edamontology/edamontology/main/releases/EDAM_1.XX.owl for all the 3 schemas used (1.16, 1.18, 1.20).

Screenshot from 2023-03-06 17-59-42

jprmachado commented 1 year ago

I will close this branch, merge probably was incorrectly done this PR is replaced by #20