Check what the SOPs in the emobon biosamples includes

emo-bon / sequencing-data

The files controlling and describing the sequencing metadata

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Check what the SOPs in the emobon biosamples includes #16

Open kmexter opened 2 weeks ago

kmexter commented 2 weeks ago

Following my extensive analysis of ILVOs BioSample metadata I should do the same on our emo bon ones In particular

do we use URLs whereever we can
how do we refer to SOPs
Is it clear from the metadata fields what gene type (if just one) is included
do we include genoscope SOPs in the experiement metadata (if that is what the experiment metadata are supposed to include)? In other words, to a complete outsider, do our ENA metadata provide FULL provenance and reusability?

kmexter commented 2 weeks ago

Pinging @cpavloud just as an FYI - I will pass this by you if I have any recommendations to make

kmexter commented 2 weeks ago

Note to self: For the samples that are going for shotgun metagenomics, we will have one run accession per sample accession, unless sequencing is repeated. In that case, we will have multiple run accessions for one sample accession.

For the samples that are going for metabarcoding, we will have (at least) two run accessions (one per gene) for one sample accession.