emorice / gemz

Gene expression model zoo
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CMK cluster diagnosis #1

Closed emorice closed 2 years ago

emorice commented 2 years ago
emorice commented 2 years ago

Cancelling. This was the issue that prompted the writing of GEMZ, but the first examples uncovered other interesting phenomena (regularization in high dim, mixture models in high dim) that drove the development of quite a few models and a lot of tooling. This includes a higher-level way to code low-rank updates in gemz.linalg, meaning that writing models with corrections for means is not really an issue anymore. See models.gmm and models.igmm for example of models that handle rank-2 updates due to loo-means with much simpler code than CMK. As such, writing a new variant of CMK with cluster means is not scheduled anymore.