search

emosca-cnr / scMuffin

scMuffin - A MUlti-Features INtegrative approach for SC data analysis
https://emosca-cnr.github.io/scMuffin/
2 stars 0 forks source link

scML <- CNV_analysis(scML) #3

Open renyuan001 opened 5 months ago

renyuan001 commented 5 months ago

Number of communities: 17 Elapsed time: 52 seconds Adding the partition Using eps = NA Error in if (firstval == -1) { : missing value where TRUE/FALSE needed In addition: Warning message: In asMethod(object) : sparse->dense coercion: allocating vector of size 21.9 GiB

emosca-cnr commented 5 months ago

Dear renyuan001,

thanks for reporting this issue. For some reason the code can not set eps parameter succesfully, which by default is set to the standard deviation of the median of CNV values among cluster.