Number of communities: 17
Elapsed time: 52 seconds
Adding the partition
Using eps = NA
Error in if (firstval == -1) { : missing value where TRUE/FALSE needed
In addition: Warning message:
In asMethod(object) :
sparse->dense coercion: allocating vector of size 21.9 GiB
thanks for reporting this issue.
For some reason the code can not set eps parameter succesfully, which by default is set to the standard deviation of the median of CNV values among cluster.
How did you define "scML"?
what happens if you try to set eps to something like 0.1?
Number of communities: 17 Elapsed time: 52 seconds Adding the partition Using eps = NA Error in if (firstval == -1) { : missing value where TRUE/FALSE needed In addition: Warning message: In asMethod(object) : sparse->dense coercion: allocating vector of size 21.9 GiB