emreg00 / toolbox

Toolbox - generic utilities for data processing (e.g., parsing, proximity, guild scoring, etc...)
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Running speed of calculate the proximity of drug disease pair #3

Open gllspeed opened 1 year ago

gllspeed commented 1 year ago

Hi, Emre, I used your code to reproduce the similarity between drugs and diseases in your paper. It takes 1000 times to calculate the mean and standard deviation of the distance of a drug disease pair, so the code runs very slowly. Is there any other way to speed up the running speed. Look forward to your help to answer, thank you!