a bug about vmmin - Githubissues

emvolz-phylodynamics / mlesky

MIT License

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Closed Naclist closed 1 year ago

Naclist commented 1 year ago

I used your staphy examples and get an error as below when try to run 'fit = mlskygrid(treeMRSA)':

Error in optim(par = theta0, fn = of, method = "BFGS", control = list(trace = ifelse(quiet, : initial value in 'vmmin' is not finite

I dont know if it is like a systematic error because when I use another device, the example code run well...

xavierdidelot commented 1 year ago

sorry I could not reproduce this error on my side...

Naclist commented 1 year ago

sorry I could not reproduce this error on my side...

That's OK, I can handle the newick of my own...I am just curious

Naclist commented 1 year ago

sorry I could not reproduce this error on my side...

That's OK, I can handle the newick of my own...I am just curious

Update, I did not realize my tree was a polytomy