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emvolz-phylodynamics / phyland

Phylogeographic inference with structured coalescent models
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Added H5N1 mini example #2

Closed sdwfrost closed 7 years ago

sdwfrost commented 7 years ago

I added the files from the H5N1 practical, but the vignette isn't working:

> tr2.phyland <- phylandml(tr2,delimiter="_") Error in minuslogl(Ne1 = 2.33159799950375, Ne2 = 2.33159799950375, Ne3 = 2.33159799950375,  :    formal argument "migrate14" matched by multiple actual arguments
emvolz commented 7 years ago

I fixed the bug that was causing this (related to generation of design matrix)