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emyyue / BioPathNet

Codebase for BioPathNet to predict links in biomedical knowledge graphs
MIT License
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BioPathNet on synthetic lethality (SL) #2

Open ZhengtingHuang888 opened 1 month ago

ZhengtingHuang888 commented 1 month ago

Hi,

Thanks for your work on BioPathNet! I'm trying to run it on synthetic lethality (SL) data but couldn't find specific instructions. Could you provide some guidance or point me to relevant examples?

Appreciate any help!

Best wishes!

emyyue commented 1 month ago

Hi,

thanks for your question! The SynLethDB data we used is from the repository of KR4SL. We further processed the data (e.g. by removing reverse relations ('duplicated' triplets), as they are introduced natively in BioPathNet) using the script in reproduce/synleth/02_prepare_data.py.

Hope this helps! Let us know if there are further questions.

Best regards!

ZhengtingHuang888 commented 1 month ago

Thank you very much！