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enai4bio / DeepAAI

DeepAAI
GNU Affero General Public License v3.0
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Issues related to input data #3

Open Chenyb939 opened 1 year ago

Chenyb939 commented 1 year ago

May I ask which python file we can use to generate pkl files and npy files in the dataset folder. And what format the data needs to be organized into.

stzhangjie commented 1 year ago

Thank you very much for your comments. Regarding the data, we manually processed the data and you can find how we processed data in the [Method] Section.

Chenyb939 commented 1 year ago

@stzhangjie Hi there, your work about prediction of antibodies’ neutralizability is impressive. And we want to reproduce your work for a learning purpose from the very first step. However, I didn't find the source data used in this paper, including the label, the antigen and antibody sequences of HIV, SARS-COV-2, influenza, and dengue. Could you please provide the data for me? Moreover, I'm so confused about using data processing scripts to generate model input. Could you please provide more information about the step of implementing scripts? Thanks for your help! Have a good day!