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enasequence / enaBrowserTools

A collection of scripts to assist in the retrieval of data from the ENA Browser
Apache License 2.0
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enaDataGet - HTTP error 400 #78

Closed Didoule closed 1 year ago

Didoule commented 1 year ago

Hi all - I had a pipeline which was working great to pull fastq sequences from ENA using enaDataGet and then assemble with SPAdes however it is now no longer working. The error seems to be related to a previous post but I couldn't see what the solution had been. This is the error message I get:

"Traceback (most recent call last): File "/apps/system/easybuild/software/enaBrowserTools/1.6-GCCcore-8.2.0-Python-3.7.2/python3/enaDataGet.py", line 116, in readGet.download_files(accession, output_format, dest_dir, fetch_index, fetch_meta, aspera) File "/apps/system/easybuild/software/enaBrowserTools/1.6-GCCcore-8.2.0-Python-3.7.2/python3/readGet.py", line 93, in download_files lines = utils.download_report_from_portal(search_url) File "/apps/system/easybuild/software/enaBrowserTools/1.6-GCCcore-8.2.0-Python-3.7.2/python3/utils.py", line 473, in download_report_from_portal response = get_report_from_portal(url) File "/apps/system/easybuild/software/enaBrowserTools/1.6-GCCcore-8.2.0-Python-3.7.2/python3/utils.py", line 470, in get_report_from_portal return urlrequest.urlopen(request, context=gcontext) File "/apps/system/easybuild/software/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/urllib/request.py", line 222, in urlopen return opener.open(url, data, timeout) File "/apps/system/easybuild/software/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/urllib/request.py", line 531, in open response = meth(req, response) File "/apps/system/easybuild/software/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/urllib/request.py", line 641, in http_response 'http', request, response, code, msg, hdrs) File "/apps/system/easybuild/software/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/urllib/request.py", line 569, in error return self._call_chain(args) File "/apps/system/easybuild/software/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/urllib/request.py", line 503, in _call_chain result = func(args) File "/apps/system/easybuild/software/Python/3.7.2-GCCcore-8.2.0/lib/python3.7/urllib/request.py", line 649, in http_error_default raise HTTPError(req.full_url, code, msg, hdrs, fp) urllib.error.HTTPError: HTTP Error 400: ERROR: Something unexpected went wrong please try again. If problem persists, please contact ENA (https://www.ebi.ac.uk/ena/browser/support) for assistance, with the above error details."

Please can someone let me know how this can be fixed? Many thanks!

lilim-ebi commented 1 year ago

Hi,

I think you have an older version of the tool. We made changes in one of our APIs and we updated the enaBrowserTools to work with it. Please update, and if the issue persists, I'll look into it further.