The gene is detected as well as the source and a gap located in the file
gene 56716563..56758743
/gene="LOC106582566"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon."
/db_xref="GeneID:106582566"
mRNA join(56716563..56716682,56719177..>56719254,
<56742712..56742807,56743880..56743972,56745317..56745442,
56745673..56745737,56749029..56749092,56749349..56749495,
56751273..56751343,56751508..56751595,56752027..56752179,
56754778..56754942,56755341..56755402,56757044..56757155,
56757360..56757459,56757978..56758083,56758205..56758743)
/gene="LOC106582566"
/product="ATP-dependent 6-phosphofructokinase, liver
type-like"
/inference="similar to RNA sequence (same
species):INSD:GBRB01064866.1"
/exception="annotated by transcript or proteomic data"
/note="The sequence of the model RefSeq transcript was
modified relative to this genomic sequence to represent
the inferred CDS: added 510 bases not found in genome
assembly; Derived by automated computational analysis
using gene prediction method: Gnomon. Supporting evidence
includes similarity to: 1 EST, 16 Proteins, and 98%
coverage of the annotated genomic feature by RNAseq
alignments"
/transcript_id="XM_014165779.1"
/db_xref="GeneID:106582566"
I am not sure if the mRNA is according to accepted standards but this is how it is available online... It does detect the mRNA when I remove most of the positions so I am guessing it is related to that...
I am trying to parse the salmon genome from the NCBI and noticed that certain mRNA / CDS features are "ignored".
A slimmed down file is located here: http://fungen.wur.nl/~jasperk/sequencetools/out21.test
The gene is detected as well as the source and a gap located in the file
The mRNA however is not in the list...
I am not sure if the mRNA is according to accepted standards but this is how it is available online... It does detect the mRNA when I remove most of the positions so I am guessing it is related to that...