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enblacar / SCpubr

Generate high quality, publication ready visualizations for single cell transcriptomics data.
https://enblacar.github.io/SCpubr-book/
GNU General Public License v3.0
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Replacing LIANA's plots with SCpubr #21

Closed dbdimitrov closed 1 year ago

dbdimitrov commented 1 year ago

Hi @enblacar,

I was thinking, perhaps I should completely replace LIANA's plots with the Ligand-Receptor ones from SCpubr in the next few updates.

In the end, they are very much with liana's, with yours being of higher quality.

Perhaps, one thing that I'm missing currently in LIANA is a ligand-receptor dotplot across samples. Would you be open to having one in SCpubr? I can do a PR with the basis for the function (likely not as in-depth and as cutomizable as your standard). I can also keep that one to LIANA alone.

Let me know what your thoughts are on this!

Best, Daniel

dbdimitrov commented 1 year ago

PS. I'm asking in relation to having a dotplot in this tutorial (i.e. across contexts/samples): https://saezlab.github.io/liana/articles/liana_cc2tensor.html

enblacar commented 1 year ago

Closing this issue as we discussed it in person!

Enrique