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enblacar / SCpubr

Generate high quality, publication ready visualizations for single cell transcriptomics data.
https://enblacar.github.io/SCpubr-book/
GNU General Public License v3.0
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Where is the function do_AzimuthAnalysisPlot #47

Closed ehatl closed 10 months ago

ehatl commented 10 months ago

Thanks for the great package is amazing. I tried to do the report for Azimuth annotation with this function but I can find it. How can i get it?

enblacar commented 10 months ago

Hi @ehatl,

Thanks for using my package!

SCpubr::do_AzimuthAnalysisPlot() was removed when changing from v1.1.2 to v2.0.0. See more info here: https://github.com/enblacar/SCpubr/blob/main/NEWS.md#removed-functions-1

In short, it arrived to a point in which a lot of errors were occurring in SCpubr because functions such as this one would use other functions in the package and every minor change/improvement to the source functions would result in a cascade of downstream bugs.

For the sake of simplicity, I decided to remove these internal call to other functions from all functions when upgrading to v2.0.0. For SCpubr::do_AzimuthAnalysisPlot(), this meant that the function was completely redundant, as one can generate such plots with a combination of SCpubr::do_DimPlot(), SCpubr::do_FeaturePlot() and SCpubr::do_BarPlot().

If you want to still access the function, have to downgrade to v1.1.2. Sorry for the inconveniences!

Enrique