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endixk / ezaai

EzAAI - High Throughput Prokaryotic AAI Calculator
http://leb.snu.ac.kr/ezaai
GNU General Public License v3.0
36 stars 3 forks source link

Update documentation for bioconda usage #16

Closed aaronmussig closed 2 years ago

aaronmussig commented 2 years ago

Hi,

The package is now in Bioconda if you would like to update your documentation to reflect the usage. EzAAI is the alias for calling the JAR in the bioconda environment.

e.g.

(ezaai) ~/tmp: EzAAI extract -i GCA_000687775.1_ASM68777v1_genomic.fna -o /tmp/foo
[SEP 30 08:37:44] EzAAI   |:  EzAAI - v1.2.2 [Aug. 2022]
[SEP 30 08:37:45] EzAAI   |:  Running prodigal on genome GCA_000687775.1_ASM68777v1_genomic.fna...
[SEP 30 08:37:46] EzAAI   |:  Converting given CDS file into protein database... (GCA_000687775.1_ASM68777v1_genomic.fna.faa -> /tmp/foo)
[SEP 30 08:37:47] EzAAI   |:  Task finished.

Cheers, Aaron

endixk commented 2 years ago

Dear Aaron, thank you for your hard work that should have been done by ourselves 😅