Closed bsb2014 closed 1 year ago
Can snplift swap REF and ALT (including genotype) if reference allele was changed? thanks.
This is not a case that is treated by SNPLift. I suggest you swap the alleles and genotypes prior to using SNPLift to align to another genome.
Can snplift swap REF and ALT (including genotype) if reference allele was changed? thanks.