search

enpkg / enpkg_graph_builder

ENPKG graph builder
GNU General Public License v3.0
1 stars 0 forks source link

Inconsistencies in the ontology of the graph #25

Open madina1203 opened 2 weeks ago

madina1203 commented 2 weeks ago

Based on the schema, there were identified some nodes that might need to be reconsidered. Can you, please, consider those? PREFIX enpkg: https://enpkg.commons-lab.org/kg/ PREFIX enpkgmodule: https://enpkg.commons-lab.org/module/

  1. enpkg:LCMSAnalysisPos enpkg:has_sirius_annotation enpkg:LCMSFeatureList . (the property links to LCMSFeatureList, but it already has enpkg: has_lcms_feature_list)

  2. enpkg:LCMSAnalysis 
 enpkg:has_sirius_annotation enpkg:LCMSFeatureList . (similar to 1)

  3. enpkg:LabExtract rdfs:label xsd:string ;
    enpkg:has_lcms_feature_list enpkg:LCMSAnalysis, ( has_lcms_feature_list links to LCMSAnalysis ) enpkg:LCMSAnalysisPos ; enpkg:has_sirius_annotation enpkg:LCMSAnalysis, enpkg:LCMSAnalysisPos ;

  4. enpkg:LabObject rdfs:label xsd:string ; 
enpkg:has_lcms_feature_list xsd:string, enpkg:LCMSAnalysis, enpkg:LCMSAnalysisPos, enpkg:LabExtract, enpkg:LabObject, enpkg:WDTaxon,
    enpkg:XRef ;
    enpkg:has_sirius_annotation xsd:string, enpkg:LCMSAnalysis, enpkg:LCMSAnalysisPos, enpkg:LabExtract, enpkg:LabObject, enpkg:WDTaxon, enpkg:XRef ; (similar to 3 and 1 )

    1. enpkg:RawMaterial enpkg:has_LCMS xsd:string, enpkg:WDTaxon, enpkg:XRef ; (has_LCMS links to wikidata) enpkg:has_lcms_feature_list xsd:string, enpkg:LabExtract, enpkg:LabObject, enpkg:WDTaxon, enpkg:XRef ; (has_lcms_feature_list links to LabExtract, LabObject, etc, should RawMaterial have Feature_List? ) enpkg:has_sirius_annotation xsd:string, enpkg:LabExtract, enpkg:LabObject, enpkg:WDTaxon, enpkg:XRef ;

    2. enpkg:MS2Spectrum rdfs:label xsd:string ; enpkg:has_sirius_annotation ns1:Annotation, enpkg:IsdbAnnotation, enpkg:SiriusStructureAnnotation ; (has_sirius_annotation links to IsdbAnnotation)