enpkg / enpkg_mn_isdb_taxo

ENPKG repository to perform ISDB annotation, MS1 annotation, Molecular Networking and annotations reweighting on a set of individual files
GNU Affero General Public License v3.0
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Errors #2

Closed oolonek closed 1 year ago

oolonek commented 2 years ago
Number of annotations reweighted at the NPClassifier pathway level: 25
Number of annotations reweighted at the NPClassifier superclass level: 23
Number of annotations reweighted at the NPClassifier class level: 15

            Chemically informed reponderation done

Traceback (most recent call last):
  File "src/nb_indifile.py", line 324, in <module>
    feature_intensity_table_formatted = feature_intensity_table_formatter(feature_table)
  File "/home/allardpm/git_repos/mandelbrot/indifiles_annotation/src/formatters.py", line 17, in feature_intensity_table_formatter
    feature_intensity_table.set_index('row_ID', inplace=True)
  File "/home/allardpm/anaconda3/envs/indifiles_annotation_env/lib/python3.8/site-packages/pandas/util/_decorators.py", line 311, in wrapper
    return func(*args, **kwargs)
  File "/home/allardpm/anaconda3/envs/indifiles_annotation_env/lib/python3.8/site-packages/pandas/core/frame.py", line 5500, in set_index
    raise KeyError(f"None of {missing} are in the columns")
KeyError: "None of ['row_ID'] are in the columns"

Cant track back the sample ...