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enriquea / feseR

feseR: Combining feature selection methods for analyzing omics data
https://github.com/enriquea/feseR
GNU General Public License v2.0
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Some improvements and additions #2

Closed drychkov closed 5 years ago

drychkov commented 5 years ago

Changes include:

  1. Verbose option for caret::rfe()
  2. AUC and Kohen's Kappa as model metric (I had to include modified function rfFunc2() since the original one from the caret package has bugs)
  3. Parallel computations implementations. It requires the regular cluster setup using the doParallel package before launching combineFS() function. I'm sure it would possibly be more efficient to use BiocParallel package instead, but I didn't work on it yet.
  4. Message and output fix on the correlation filtering steps.