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enthought / mayavi

3D visualization of scientific data in Python
http://docs.enthought.com/mayavi/mayavi/
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zsh: segmentation fault python3.11 examples/mayavi/advanced_visualization/mlab_3D_to_2D.py #1237

Open homosapien-lcy opened 1 year ago

homosapien-lcy commented 1 year ago

When running mayavi/examples/mayavi/advanced_visualization/mlab_3D_to_2D.py, a segmentation fault will rise

replication: python mayavi/examples/mayavi/advanced_visualization/mlab_3D_to_2D.py

full stack:

(py311) (base) cyliu@aus552cyliu mayavi % python3.11 -X faulthandler examples/mayavi/advanced_visualization/mlab_3D_to_2D.py
2023-05-11 15:03:53.645 Python[6519:159488] ApplePersistenceIgnoreState: Existing state will not be touched. New state will be written to /var/folders/2z/kylzj9s92y71cxscmljmpqrh0000gt/T/org.python.python.savedState
/Users/cyliu/Documents/3.11_test/mayavi/examples/mayavi/advanced_visualization/mlab_3D_to_2D.py:194: DeprecationWarning: This function is deprecated. Please call randint(-3, 3 + 1) instead
  X = np.random.random_integers(-3, 3, N)
/Users/cyliu/Documents/3.11_test/mayavi/examples/mayavi/advanced_visualization/mlab_3D_to_2D.py:195: DeprecationWarning: This function is deprecated. Please call randint(-3, 3 + 1) instead
  Y = np.random.random_integers(-3, 3, N)
/Users/cyliu/Documents/3.11_test/mayavi/examples/mayavi/advanced_visualization/mlab_3D_to_2D.py:196: DeprecationWarning: This function is deprecated. Please call randint(-3, 3 + 1) instead
  Z = np.random.random_integers(-3, 3, N)
Fatal Python error: Segmentation fault

Current thread 0x000000010c81a600 (most recent call first):
  File "/Users/cyliu/Documents/3.11_test/mayavi/tvtk/tvtk_base.py", line 659 in _wrap_call
  File "tvtk_classes/open_gl_render_window.py", line 95 in get_pixel_data
  File "/Users/cyliu/Documents/3.11_test/mayavi/mayavi/tools/figure.py", line 351 in screenshot
  File "/Users/cyliu/Documents/3.11_test/mayavi/examples/mayavi/advanced_visualization/mlab_3D_to_2D.py", line 227 in <module>

Extension modules: numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, matplotlib._c_internal_utils, PIL._imaging, matplotlib._path, kiwisolver._cext, matplotlib._image, traits.ctraits, xxsubtype, shiboken6.Shiboken, PySide6.QtCore, PySide6.QtGui, PySide6.QtWidgets, PySide6.QtPrintSupport, PySide6.QtNetwork, PySide6.QtWebChannel, PySide6.QtWebEngineCore, PySide6.QtWebEngineWidgets, vtkmodules.vtkCommonCore, vtkmodules.vtkWebCore, vtkmodules.vtkCommonMath, vtkmodules.vtkCommonTransforms, vtkmodules.vtkCommonDataModel, vtkmodules.vtkCommonExecutionModel, vtkmodules.vtkIOCore, vtkmodules.vtkImagingCore, vtkmodules.vtkIOImage, vtkmodules.vtkIOXMLParser, vtkmodules.vtkIOXML, vtkmodules.vtkCommonMisc, vtkmodules.vtkFiltersCore, vtkmodules.vtkRenderingCore, vtkmodules.vtkRenderingContext2D, vtkmodules.vtkRenderingFreeType, vtkmodules.vtkRenderingSceneGraph, vtkmodules.vtkRenderingVtkJS, vtkmodules.vtkIOExport, vtkmodules.vtkWebGLExporter, vtkmodules.vtkInteractionStyle, vtkmodules.vtkFiltersGeneral, vtkmodules.vtkFiltersSources, vtkmodules.vtkInteractionWidgets, vtkmodules.vtkViewsCore, vtkmodules.vtkViewsInfovis, vtkmodules.vtkCommonComputationalGeometry, vtkmodules.vtkCommonSystem, vtkmodules.vtkIOLegacy, vtkmodules.vtkDomainsChemistry, vtkmodules.vtkRenderingHyperTreeGrid, vtkmodules.vtkRenderingUI, vtkmodules.vtkRenderingOpenGL2, vtkmodules.vtkRenderingContextOpenGL2, vtkmodules.vtkRenderingVolume, vtkmodules.vtkImagingMath, vtkmodules.vtkRenderingVolumeOpenGL2, vtkmodules.vtkViewsContext2D, vtkmodules.vtkTestingRendering, vtkmodules.vtkRenderingVolumeAMR, vtkmodules.vtkPythonContext2D, vtkmodules.vtkRenderingParallel, vtkmodules.vtkRenderingVR, vtkmodules.vtkRenderingMatplotlib, vtkmodules.vtkRenderingLabel, vtkmodules.vtkRenderingLOD, vtkmodules.vtkRenderingLICOpenGL2, vtkmodules.vtkRenderingImage, vtkmodules.vtkRenderingExternal, vtkmodules.vtkIOXdmf2, vtkmodules.vtkIOVeraOut, vtkmodules.vtkIOVPIC, vtkmodules.vtkIOTecplotTable, vtkmodules.vtkIOTRUCHAS, vtkmodules.vtkIOSegY, vtkmodules.vtkIOParallelXML, vtkmodules.vtkIOLSDyna, vtkmodules.vtkIOParallelLSDyna, vtkmodules.vtkIOExodus, vtkmodules.vtkIOParallelExodus, vtkmodules.vtkIOPLY, vtkmodules.vtkIOPIO, vtkmodules.vtkIOMovie, vtkmodules.vtkIOOggTheora, vtkmodules.vtkIOOMF, vtkmodules.vtkIONetCDF, vtkmodules.vtkIOMotionFX, vtkmodules.vtkIOGeometry, vtkmodules.vtkIOParallel, vtkmodules.vtkIOMINC, vtkmodules.vtkIOInfovis, vtkmodules.vtkIOImport, vtkmodules.vtkParallelCore, vtkmodules.vtkIOIOSS, vtkmodules.vtkIOH5part, vtkmodules.vtkIOH5Rage, vtkmodules.vtkIOGeoJSON, vtkmodules.vtkIOVideo, vtkmodules.vtkIOExportPDF, vtkmodules.vtkRenderingGL2PSOpenGL2, vtkmodules.vtkIOExportGL2PS, vtkmodules.vtkIOEnSight, vtkmodules.vtkIOCityGML, vtkmodules.vtkIOChemistry, vtkmodules.vtkIOCesium3DTiles, vtkmodules.vtkIOCONVERGECFD, vtkmodules.vtkIOHDF, vtkmodules.vtkIOCGNSReader, vtkmodules.vtkIOAsynchronous, vtkmodules.vtkIOAMR, vtkmodules.vtkInteractionImage, vtkmodules.vtkImagingStencil, vtkmodules.vtkImagingStatistics, vtkmodules.vtkImagingGeneral, vtkmodules.vtkImagingOpenGL2, vtkmodules.vtkImagingMorphological, vtkmodules.vtkImagingFourier, vtkmodules.vtkIOSQL, vtkmodules.vtkCommonColor, vtkmodules.vtkImagingSources, vtkmodules.vtkInfovisCore, vtkmodules.vtkGeovisCore, vtkmodules.vtkInfovisLayout, vtkmodules.vtkRenderingAnnotation, vtkmodules.vtkImagingHybrid, vtkmodules.vtkImagingColor, vtkmodules.vtkFiltersTopology, vtkmodules.vtkFiltersSelection, vtkmodules.vtkFiltersSMP, vtkmodules.vtkFiltersPython, vtkmodules.vtkFiltersProgrammable, vtkmodules.vtkFiltersModeling, vtkmodules.vtkFiltersPoints, vtkmodules.vtkFiltersVerdict, vtkmodules.vtkFiltersStatistics, vtkmodules.vtkFiltersParallelStatistics, vtkmodules.vtkFiltersImaging, vtkmodules.vtkFiltersExtraction, vtkmodules.vtkFiltersGeometry, vtkmodules.vtkFiltersHybrid, vtkmodules.vtkFiltersTexture, vtkmodules.vtkFiltersParallel, vtkmodules.vtkFiltersParallelImaging, vtkmodules.vtkFiltersParallelDIY2, vtkmodules.vtkFiltersGeneric, vtkmodules.vtkFiltersFlowPaths, vtkmodules.vtkFiltersAMR, vtkmodules.vtkDomainsChemistryOpenGL2, vtkmodules.vtkFiltersHyperTree, vtkmodules.vtkCommonPython, vtkmodules.vtkChartsCore, vtkmodules.vtkAcceleratorsVTKmCore, vtkmodules.vtkAcceleratorsVTKmDataModel, vtkmodules.vtkAcceleratorsVTKmFilters, vtk.vtkCommonCore, vtk.vtkCommonDataModel, vtk.vtkParallelCore, array_ext, tvtk.array_ext, PySide6.QtSvg, PySide6.QtSvgWidgets (total: 170)
zsh: segmentation fault  python3.11 -X faulthandler

Link: https://github.com/enthought/mayavi/blob/master/examples/mayavi/advanced_visualization/mlab_3D_to_2D.py

Env: MacOS, python3.11

Package Version Editable project location

apptools 5.2.0 attrdict 2.0.1 attrdict3 2.0.2 blosc2 2.0.0 celiagg 2.1.3 certifi 2022.12.7 chaco 5.1.0 /Users/cyliu/Documents/3.11_test/chaco charset-normalizer 3.1.0 configobj 5.0.8 contourpy 1.0.7 cPython 0.0.6 cycler 0.11.0 Cython 0.29.34 dnspython 2.3.0 enable 5.4.0.dev38 /Users/cyliu/Documents/3.11_test/enable envisage 7.0.3 fonttools 4.39.2 h5py 3.8.0 idna 3.4 joblib 1.2.0 kiwisolver 1.4.4 matplotlib 3.7.1 mayavi 4.8.2.dev0 /Users/cyliu/Documents/3.11_test/mayavi msgpack 1.0.5 numexpr 2.8.4 numpy 1.24.2 packaging 23.1 pandas 1.5.3 Pillow 9.4.0 pip 23.1 py-cpuinfo 9.0.0 PyAudio 0.2.13 pyface 8.0.0 /Users/cyliu/Documents/3.11_test/pyface pygarrayimage 1.0 pyglet 2.0.5 /Users/cyliu/Documents/3.11_test/pyglet Pygments 2.14.0 pymongo 4.3.3 pyparsing 3.0.9 PySide6 6.4.3 PySide6-Addons 6.4.3 PySide6-Essentials 6.4.3 python-dateutil 2.8.2 pythonw 3.0.3 pytz 2023.2 reportlab 3.6.12 requests 2.28.2 scikit-learn 1.2.2 scipy 1.10.1 setuptools 65.6.3 shiboken6 6.4.3 six 1.16.0 tables 3.8.0 threadpoolctl 3.1.0 traits 6.4.1 traitsui 8.0.0.dev0 /Users/cyliu/Documents/3.11_test/traitsui urllib3 1.26.15 vtk 9.2.6 wxPython 4.2.0