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enthought / mayavi

3D visualization of scientific data in Python
http://docs.enthought.com/mayavi/mayavi/
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Random SIGSEGVs on Mac OS X 10.7 using Qt-based Interface #22

Open jsnyder opened 12 years ago

jsnyder commented 12 years ago

I'm running: Python 2.7.2, VTK 5.8.0, Qt 4.7.4, on Mac OS X and ets develop as of Dec 20.

If I bring up Mayavi and begin working with it for some time (change DataSetClipper to ImplicitPlane, add some IsoSurfaces) eventually I seem to get a crash at some point that I haven't been able to tie to a particular action. I'm wondering if I can provide some better feedback or if there's some way to better track down the cause of the crash myself? I'm not terribly familiar with using qt or GUI programming, but I've done plenty of C and Python programming. What are the recommended methodologies for figuring out which component might be causing this? It looks like ultimately we're dropping into a C/C++ binding call through SIP which causes the meltdown, but I'm not sure what tool would be best to track this further.

Below is Apple's "Problem Report" that gets generated when the crash occurs:

Process:         Python [3575]
Path:            /usr/local/Cellar/python/2.7.2/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python
Identifier:      org.python.python
Version:         2.7.2 (2.7.2)
Code Type:       X86-64 (Native)
Parent Process:  ??? [1]

Date/Time:       2011-12-21 14:47:16.115 -0600
OS Version:      Mac OS X 10.7.2 (11C73)
Report Version:  9

Interval Since Last Report:          74660 sec
Crashes Since Last Report:           12
Per-App Interval Since Last Report:  69843 sec
Per-App Crashes Since Last Report:   12
Anonymous UUID:                      21C65421-D31F-4F37-A596-94EF9C347B88

Crashed Thread:  0  Dispatch queue: com.apple.main-thread

Exception Type:  EXC_BAD_ACCESS (SIGSEGV)
Exception Codes: KERN_INVALID_ADDRESS at 0x0000000000000010

VM Regions Near 0x10:
--> 
    __TEXT                 0000000100000000-0000000100001000 [    4K] r-x/rwx SM=COW  /usr/local/Cellar/python/2.7.2/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python

Application Specific Information:
objc[3575]: garbage collection is OFF

Thread 0 Crashed:: Dispatch queue: com.apple.main-thread
0   sip.so                          0x00000001007e959c sip_api_is_py_method + 308
1   sip.so                          0x00000001007e96c1 sip_api_common_dtor + 95
2   QtGui.so                        0x00000001031c2a37 sipQLineEdit::~sipQLineEdit() + 57
3   QtCore                          0x000000010160e57f QObjectPrivate::deleteChildren() + 95
4   QtGui                           0x00000001039c57e9 QWidget::~QWidget() + 697
5   QtGui.so                        0x00000001031ff34f sipQGroupBox::~sipQGroupBox() + 65
6   QtCore                          0x000000010160e57f QObjectPrivate::deleteChildren() + 95
7   QtGui                           0x00000001039c57e9 QWidget::~QWidget() + 697
8   QtGui.so                        0x000000010336017f sipQWidget::~sipQWidget() + 65
9   QtCore                          0x0000000101703ebe QObject::event(QEvent*) + 1118
10  QtGui                           0x00000001039cc83e QWidget::event(QEvent*) + 78
11  QtGui.so                        0x000000010335cb7c sipQWidget::event(QEvent*) + 76
12  QtGui                           0x000000010397215d QApplicationPrivate::notify_helper(QObject*, QEvent*) + 189
13  QtGui                           0x000000010397818d QApplication::notify(QObject*, QEvent*) + 349
14  QtGui.so                        0x0000000103319d62 sipQApplication::notify(QObject*, QEvent*) + 84
15  QtCore                          0x00000001016094dc QCoreApplication::notifyInternal(QObject*, QEvent*) + 124
16  QtCore                          0x00000001016f70cb QCoreApplicationPrivate::sendPostedEvents(QObject*, int, QThreadData*) + 731
17  com.apple.CoreFoundation        0x00007fff923f0b51 __CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION__ + 17
18  com.apple.CoreFoundation        0x00007fff923f03bd __CFRunLoopDoSources0 + 253
19  com.apple.CoreFoundation        0x00007fff924171a9 __CFRunLoopRun + 905
20  com.apple.CoreFoundation        0x00007fff92416ae6 CFRunLoopRunSpecific + 230
21  com.apple.HIToolbox             0x00007fff8e27e3d3 RunCurrentEventLoopInMode + 277
22  com.apple.HIToolbox             0x00007fff8e28558f ReceiveNextEventCommon + 181
23  com.apple.HIToolbox             0x00007fff8e2854ca BlockUntilNextEventMatchingListInMode + 62
24  com.apple.AppKit                0x00007fff95cf13f1 _DPSNextEvent + 659
25  com.apple.AppKit                0x00007fff95cf0cf5 -[NSApplication nextEventMatchingMask:untilDate:inMode:dequeue:] + 135
26  com.apple.AppKit                0x00007fff95ced62d -[NSApplication run] + 470
27  QtGui                           0x000000010392d174 QEventDispatcherMac::processEvents(QFlags<QEventLoop::ProcessEventsFlag>) + 1588
28  QtCore                          0x00000001016f5a34 QEventLoop::processEvents(QFlags<QEventLoop::ProcessEventsFlag>) + 68
29  QtCore                          0x00000001016f5d54 QEventLoop::exec(QFlags<QEventLoop::ProcessEventsFlag>) + 180
30  QtCore                          0x00000001016f737c QCoreApplication::exec() + 188
31  QtGui.so                        0x000000010331aa81 meth_QApplication_exec_ + 81
32  org.python.python               0x00000001000a357b PyEval_EvalFrameEx + 18011
33  org.python.python               0x00000001000a67d7 PyEval_EvalCodeEx + 2103
34  org.python.python               0x00000001000a6988 fast_function + 296
35  org.python.python               0x00000001000a362d PyEval_EvalFrameEx + 18189
36  org.python.python               0x00000001000a6913 fast_function + 179
37  org.python.python               0x00000001000a362d PyEval_EvalFrameEx + 18189
38  org.python.python               0x00000001000a6913 fast_function + 179
39  org.python.python               0x00000001000a362d PyEval_EvalFrameEx + 18189
40  org.python.python               0x00000001000a67d7 PyEval_EvalCodeEx + 2103
41  org.python.python               0x00000001000a6988 fast_function + 296
42  org.python.python               0x00000001000a362d PyEval_EvalFrameEx + 18189
43  org.python.python               0x00000001000a67d7 PyEval_EvalCodeEx + 2103
44  org.python.python               0x00000001000a6988 fast_function + 296
45  org.python.python               0x00000001000a362d PyEval_EvalFrameEx + 18189
46  org.python.python               0x00000001000a67d7 PyEval_EvalCodeEx + 2103
47  org.python.python               0x00000001000a6856 PyEval_EvalCode + 54
48  org.python.python               0x00000001000c4ae4 PyRun_FileExFlags + 164
49  org.python.python               0x00000001000c5d68 PyRun_SimpleFileExFlags + 392
50  org.python.python               0x00000001000d8b99 Py_Main + 2969
51  org.python.python               0x0000000100000f04 0x100000000 + 3844

Thread 1:: Dispatch queue: com.apple.libdispatch-manager
0   libsystem_kernel.dylib          0x00007fff8e14c7e6 kevent + 10
1   libdispatch.dylib               0x00007fff8c3015be _dispatch_mgr_invoke + 923
2   libdispatch.dylib               0x00007fff8c30014e _dispatch_mgr_thread + 54

Thread 2:
0   libsystem_kernel.dylib          0x00007fff8e14a67a mach_msg_trap + 10
1   libsystem_kernel.dylib          0x00007fff8e149d71 mach_msg + 73
2   com.apple.opengl                0x00007fff94eb1389 glcDebugListener + 500
3   libsystem_c.dylib               0x00007fff918228bf _pthread_start + 335
4   libsystem_c.dylib               0x00007fff91825b75 thread_start + 13

Thread 3:
0   libsystem_kernel.dylib          0x00007fff8e14c192 __workq_kernreturn + 10
1   libsystem_c.dylib               0x00007fff91824594 _pthread_wqthread + 758
2   libsystem_c.dylib               0x00007fff91825b85 start_wqthread + 13

Thread 4:
0   libsystem_kernel.dylib          0x00007fff8e14c192 __workq_kernreturn + 10
1   libsystem_c.dylib               0x00007fff91824594 _pthread_wqthread + 758
2   libsystem_c.dylib               0x00007fff91825b85 start_wqthread + 13

Thread 0 crashed with X86 Thread State (64-bit):
  rax: 0x0000000000000000  rbx: 0x000000011b1099c0  rcx: 0x0000000103515f00  rdx: 0x0000000114a154d0
  rdi: 0x0000000000000000  rsi: 0x00000001007f302b  rbp: 0x00007fff5fbfc500  rsp: 0x00007fff5fbfc4b0
   r8: 0x00007fff5fbfc40c   r9: 0x00007fff5fbfc408  r10: 0x0000000000000081  r11: 0x000000011b1099e4
  r12: 0x0000000000000000  r13: 0x0000000100147220  r14: 0x000000011bc9e570  r15: 0x0000000000000000
  rip: 0x00000001007e959c  rfl: 0x0000000000010246  cr2: 0x0000000000000010
Logical CPU: 2

Binary Images:
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stefanoborini commented 8 years ago

It's clearly a cleanup of a widget. It's difficult to say without a reproducible example, but the most likely cause is that you are closing a window, likely a dialog.

Leaving this open for further comments, but it should really be rechecked against a more recent version of mayavi.