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envmetagen
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metabinkit
Set of programs to perform taxonomic binning.
GNU General Public License v3.0
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ASV ids are missing from final output file?
#29
Anto007
opened
4 days ago
0
Install error with R>=4
#28
nunofonseca
closed
1 year ago
0
Add option to remove in-silico generated NCBI accessions
#27
bastianegeter
closed
3 years ago
1
using top of 0.1
#26
bastianegeter
closed
4 years ago
1
Odd warning about taxid missing even though taxdb up to date
#25
bastianegeter
closed
3 years ago
2
ERROR checking new db using metabinkit_blastgendb
#24
bastianegeter
closed
4 years ago
1
metabinkit_blastgendb not creating db
#23
bastianegeter
closed
4 years ago
4
README and documentation
#22
nunofonseca
closed
4 years ago
1
install problem? metabinkit_blast and metabinkit_blastgendb
#21
bastianegeter
closed
4 years ago
0
min_pident seems wrong (negative numbers and 0s)
#20
bastianegeter
closed
3 years ago
2
double check the family level unknown selection
#19
bastianegeter
closed
4 years ago
0
change default tops to be "off"
#18
bastianegeter
closed
4 years ago
0
blacklisting if NCBI taxids not being used
#17
bastianegeter
opened
4 years ago
1
blacklisting should be done separately for each binning level
#16
bastianegeter
closed
4 years ago
0
unknown vs NA
#15
bastianegeter
closed
4 years ago
0
provide error when taxids not found
#14
bastianegeter
closed
4 years ago
0
messages
#13
bastianegeter
closed
4 years ago
0
-s is an available flag, but I think is not catered for in code
#12
bastianegeter
closed
4 years ago
1
Consider an additional "rm.unclassified" filter
#11
bastianegeter
closed
4 years ago
0
ensure blast 2.9.0 or above is being used
#10
bastianegeter
closed
4 years ago
1
makeblastdb checks
#9
bastianegeter
closed
4 years ago
1
-taxidlist option
#8
bastianegeter
closed
4 years ago
1
Line 69 in exe/metabinkit_blast
#7
bastianegeter
closed
4 years ago
0
When only one hit exists OR only one hit passes -S filter, metabin is not assigning at species level
#6
bastianegeter
closed
4 years ago
1
new error
#5
bastianegeter
closed
4 years ago
4
installing
#4
bastianegeter
closed
4 years ago
1
NCBI: sometimes there are spaces in order, family, genus etc.
#3
bastianegeter
closed
4 years ago
5
excluding specific hits
#2
bastianegeter
closed
4 years ago
3
test_files
#1
bastianegeter
closed
4 years ago
1