epaaso / sc-luca-explore

Exploring the luca dataset for building coabundance networks
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Use pseudotime to observe some plasticity in our cells #20

Open epaaso opened 3 weeks ago

epaaso commented 3 weeks ago

An alternative is using Ecotyper that defines cell states for every cell type with NMF. And using Jaccard Indicies infers ecotypes for different stages o subsets of samples.