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epam / NGB

New Genome Browser (NGB) - a Web - based NGS data viewer with unique Structural Variations (SVs) visualization capabilities, high performance, scalability, and cloud data support
MIT License
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Add "Group" by "Read Group" #155

Open lloonngg opened 6 years ago

lloonngg commented 6 years ago

We are exploring the use of NGB for visualizing high coverage bams (20,000X coverage) for cell-free DNA testing. Is it possible to add a new feature for alignment grouping by "Read Group" which is a feature of bam/sam files? IGV supports this as well as group by tag, supplementary flag, etc.

sidoruka commented 6 years ago

@lloonngg , thanks for the suggestion. Sure, we'll add grouping by "Read Group".

@rodichenko , could you please take care of this feature? (Let us know if this parameter is parsed from sam by server). Add this information to the alignment info popup as well.

sidoruka commented 6 years ago

Ok, I see that "Read group" is not parsed. @k-i-t-e , can you implement that?

mike-miroliubov commented 6 years ago

@sidoruka , looks like "read Group" is parsed, but simply is not transfered to UI. Assigned to @PolinaBevad for implementation