epam / NGB

New Genome Browser (NGB) - a Web - based NGS data viewer with unique Structural Variations (SVs) visualization capabilities, high performance, scalability, and cloud data support
MIT License
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BLAST Results - View job details: Resulting sequences list #430

Open NShaforostov opened 3 years ago

NShaforostov commented 3 years ago

User shall have the ability to view the specific BLAST search task results (regardless the task state, except Searching).

To view the results, user should click the task ID in the "History" sub-tab of the "BLAST" panel (see general details in #429). Search results form shall also contain the "Sequences" table, where the certain search results shall be shown summary grouped by their sequences: image

Table should contain not raw blast search results but aggregated results grouped by their sequences. Table shall contain the following columns:

Details:

Also, user should have the ability:

NShaforostov commented 3 years ago

Addition: In this table, there should be some fixes performed:

Currently, we display there raw-scores (score).

SilinPavel commented 3 years ago

@NShaforostov should be fixed

Tatyana2022 commented 3 years ago

Addition: In this table, there should be some fixes performed:

  • Max score - the highest alignment score in bits (bitscore) from all matches of the search query to the certain sequence
  • Total score - sum of alignment scores in bits (bitscore) from all matches of the search query on the certain sequence

Currently, we display there raw-scores (score).

Fixed

Tatyana2022 commented 3 years ago

Verified

NShaforostov commented 3 years ago

Addition: @DmitriiKrasnov As we implemented an opening of the sequence by click the sequence row itself, to not confuse users, it would be convenient to display sequence ID (in first column) as plain text (not a hyperlink), i.e.: image

Tatyana2022 commented 3 years ago

Verified

NShaforostov commented 3 years ago

Docs were added via #566 and located here.