The same as sequenza tool issue #142 , at the ExomeCNV detection step, exome_cnv.R script is called, which is also expected to be located in exomeCNV tool directory. The same, this script is not supplied with this tool. It looks like a custom script that should be located in a /src/R Fonda directory.
Approach
We suppose this script is also worth to add to /src/R Fonda directory for future third-party users.
Background
The same as
sequenzatool issue #142 , at theExomeCNV detectionstep,exome_cnv.Rscript is called, which is also expected to be located inexomeCNVtool directory. The same, this script is not supplied with this tool. It looks like a custom script that should be located in a/src/RFonda directory.Approach
We suppose this script is also worth to add to
/src/RFonda directory for future third-party users.