Problem
Currently, duplicate library names are dropped silently from library csv files created for each sample in this workflow. This prevents us from using a many-one mapping of GEX-ADT libraries like the example manifest below:
One way to get around this problem is to rename the samples for the shared libraries.
However I HIGHLY suspect this will create error from cellranger end because the prefix from FASTQ files must match sample name. TestNode01ADT = TestNode01ADT_S1_L001_R1_001.fastq.gz
Proposal
Remove enforcement of unique names for each library types.
Problem
Currently, duplicate library names are dropped silently from library csv files created for each sample in this workflow. This prevents us from using a many-one mapping of GEX-ADT libraries like the example manifest below:
One way to get around this problem is to rename the samples for the shared libraries.
However I HIGHLY suspect this will create error from cellranger end because the prefix from FASTQ files must match sample name.
TestNode01ADT = TestNode01ADT_S1_L001_R1_001.fastq.gz
Proposal
Remove enforcement of unique names for each library types.