Closed syansanofi closed 3 years ago
Issue Regardless of which realigner is used, read quality recalibration must be added. Currently ABRA realigner does not include recal.
https://github.com/epam/fonda/blob/72759b47b5bb92c43d496907fb041c96837be49c/src/main/java/com/epam/fonda/workflow/stage/impl/PostAlignment.java#L81-L94
Issue Regardless of which realigner is used, read quality recalibration must be added. Currently ABRA realigner does not include recal.
https://github.com/epam/fonda/blob/72759b47b5bb92c43d496907fb041c96837be49c/src/main/java/com/epam/fonda/workflow/stage/impl/PostAlignment.java#L81-L94