issue_#198: Update amplicon_gatk_recalibrate_tool_template

epam / fonda

Fonda is a framework which offers scalable and automatic analysis of multiple NGS sequencing data types

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issue_#198: Update amplicon_gatk_recalibrate_tool_template #203

Closed kamyshova closed 3 years ago

kamyshova commented 3 years ago

Resolves #198 The pull request provides changes to amplicon_gatk_recalibrate_tool template for BaseRecalibrator tool and change of the PrintReads tool to the ApplyBQSR tool according to new GATK verion.