cellranger count_template.txt add targeted expression panel

epam / fonda

Fonda is a framework which offers scalable and automatic analysis of multiple NGS sequencing data types

Apache License 2.0

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Closed syansanofi closed 3 years ago

syansanofi commented 3 years ago

Issue Support new targeted panel analysis in cellranger.

Approach
add --target-panel=${panel} to template.

Example target panel csv files can be found in cellranger5 package:
/cellranger-5.0.0/target_panels