Middleware: add 'toolchain' parameter to sc_rna_expression_cellranger_fastq.py

epam / fonda

Fonda is a framework which offers scalable and automatic analysis of multiple NGS sequencing data types

Apache License 2.0

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Closed kamyshova closed 3 years ago

kamyshova commented 3 years ago

This PR consists of middleware updates of the sc_rna_expression_cellranger_fastq.py:

toolchain parameter was introduced
new configs ScRnaExpression_CellRanger_Fastq_tool_human_toolchain1.json, ScRnaExpression_CellRanger_Fastq_tool_human_toolchain2.json, ScRnaExpression_CellRanger_Fastq_tool_mouse_toolchain1.json, ScRnaExpression_CellRanger_Fastq_tool_mouse_toolchain2.json were added