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epam / fonda

Fonda is a framework which offers scalable and automatic analysis of multiple NGS sequencing data types
Apache License 2.0
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This PR resolves Issue 217 #220

Closed ghost closed 3 years ago

ghost commented 3 years ago

This PR relates to #217

The pull request consists of:

codecov-commenter commented 3 years ago

Codecov Report

Merging #220 (864ca8c) into develop (8fca7d8) will increase coverage by 2.52%. The diff coverage is 100.00%.

:exclamation: Current head 864ca8c differs from pull request most recent head 34986da. Consider uploading reports for the commit 34986da to get more accurate results Impacted file tree graph

@@              Coverage Diff              @@
##             develop     #220      +/-   ##
=============================================
+ Coverage      89.84%   92.37%   +2.52%     
- Complexity       653      685      +32     
=============================================
  Files            124      124              
  Lines           3564     3566       +2     
  Branches         217      218       +1     
=============================================
+ Hits            3202     3294      +92     
+ Misses           259      170      -89     
+ Partials         103      102       -1
Impacted Files Coverage Δ
...ntity/configuration/orchestrator/MasterScript.java 78.50% <100.00%> (+68.02%) :arrow_up:
...m/fonda/workflow/stage/impl/SecondaryAnalysis.java 94.79% <0.00%> (+1.15%) :arrow_up:
...main/java/com/epam/fonda/tools/impl/QcSummary.java 95.16% <0.00%> (+1.61%) :arrow_up:
.../java/com/epam/fonda/workflow/WorkflowFactory.java 87.50% <0.00%> (+6.25%) :arrow_up:
...rc/main/java/com/epam/fonda/workflow/Workflow.java 81.81% <0.00%> (+18.18%) :arrow_up:
...onda/workflow/impl/RnaExpressionFastqWorkflow.java 100.00% <0.00%> (+27.27%) :arrow_up:
...tity/configuration/orchestrator/ScriptManager.java 40.00% <0.00%> (+40.00%) :arrow_up:
.../entity/configuration/orchestrator/ScriptType.java 100.00% <0.00%> (+100.00%) :arrow_up:

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