search

epam / fonda

Fonda is a framework which offers scalable and automatic analysis of multiple NGS sequencing data types
Apache License 2.0
8 stars 3 forks source link

Update amplicon gatk recalibrate tool template #224

Closed kamyshova closed 3 years ago

kamyshova commented 3 years ago

The pull request provides changes to amplicon_gatk_recalibrate_tool template for the BaseRecalibrator tool and the ApplyBQSR tool according to the new GATK version.

codecov-commenter commented 3 years ago

Codecov Report

Merging #224 (5d6f237) into develop (0b9114b) will not change coverage. The diff coverage is n/a.

:exclamation: Current head 5d6f237 differs from pull request most recent head 918c29f. Consider uploading reports for the commit 918c29f to get more accurate results Impacted file tree graph

@@            Coverage Diff             @@
##             develop     #224   +/-   ##
==========================================
  Coverage      92.76%   92.76%           
  Complexity       693      693           
==========================================
  Files            124      124           
  Lines           3566     3566           
  Branches         218      218           
==========================================
  Hits            3308     3308           
  Misses           159      159           
  Partials          99       99

Continue to review full report at Codecov.

Legend - Click here to learn more Δ = absolute <relative> (impact), ø = not affected, ? = missing data Powered by Codecov. Last update 0b9114b...918c29f. Read the comment docs.