Change names of monomers

Peptides

[x] 3-(3-pyridyl)-alanine
[x] D-3-(2-naphthyl)-alanine
[x] N-methyl-beta-alanine
[x] (2S)-6-amino-2-hydroxyhexanoic acid
[x] alpha-methyl-tyrosine
[x] D-Lactic acid #5195

Symbol	Old name	New name
3Pal	3-(2-pyridyl)-alanine	3-(3-pyridyl)-alanine
D-2Nal	D-3-(2-naphtyl)-alanine	D-3-(2-naphthyl)-alanine
NMebAl	3-(methylamino)propanoic acid	N-methyl-beta-alanine
DALys	6-amino-2-hydroxyhexanoic acid	(2S)-6-amino-2-hydroxyhexanoic acid
aMeTyr	L-metyrosine	alpha-methyl-tyrosine
D-OAla	D-lactic acid	D-Lactic acid

Phosphates

[x] N1,N1-dimethylethane-1,2-diamine
[x] Hydroxymethylphosphonic acid
[x] Methylphosphonothioic acid
[x] Dihydrogen phosphate
[x] Dihydrogen phosphorothioate
[x] Ethylenediamine
[x] Oxy

Symbol	Old name	New name
m2nen	(Dimethylaminoethyl)amino	N1,N1-dimethylethane-1,2-diamine
mepo2	Methylenephosphonate	Hydroxymethylphosphonic acid
msp	Methylthiophosphonate	Methylphosphonothioic acid
P- (old symbol: naP)	Sodium Phospate	Dihydrogen phosphate
sP- (old symbol: nasP)	Sodium Phosphothiotate	Dihydrogen phosphorothioate
nen	(Aminoethyl)amino	Ethylenediamine
oxy	Oxy (ether)	Oxy

Bases

[x] 6-Mercaptopurine
[x] (E)-5-(2-bromovinyl)uracil
[x] 2-hydroxypyrimidine
[x] 5-DBCO-U
[x] 5-[(methylamino)methyl]uracil
[x] 5-Thiazoleuracil
[x] 6,7-dihydro-1H-cyclopenta[d]pyrimidine-2,4(3H,5H)-dione
[x] tetrahydro-4-hydroxy-1H-pyrimidin-2-one
[x] (4R)-tetrahydro-4-hydroxy-1H-pyrimidin-2-one
[x] N1-methyl-pseudouracil
[x] 4-Cyanoethylthiothymine
[x] N9-allyl-8-oxoguanine
[x] N1-methylguanine
[x] N2,N2-dimethylguanine
[x] N2-methylguanine
[x] 6-O-methylguanine
[x] N7-methylguanine
[x] N7-methyl-8-dihydroguanine
[x] 5-methylcytosine
[x] N4-acetylcytosine
[x] G-clamp
[x] guanidino-G-clamp
[x] 4N-Hydroxycytosine
[x] 8-azidoadenine
[x] N6-benzyladenine
[x] N6-cyclopropylmethyladenine
[x] N6-cyclohexyladenine
[x] N6-cyclopentyladenine
[x] N6,N6-dimethyladenine
[x] 2-amino-6-etoxypurine
[x] N6-ethyladenine
[x] 2-(1-(3-aminopropyl)imidazole)adenine
[x] N1-methyladenine
[x] N3-(dimethylamino)propylaminoadenine
[x] N6-methyladenine

Symbol	Old name	New name
s6puri	6-Thiopurine	6-Mercaptopurine
brviny	5-(2-Bromovinyl)uracil	(E)-5-(2-bromovinyl)uracil
d4U	4-Deoxouracil	2-hydroxypyrimidine
DBCOnC	5-DBCO-U (ethylene carbamoyl hexylamino linker)	5-DBCO-U
mnm5U	5-[(Methylamino)methyl]uridine	5-[(methylamino)methyl]uracil
thiz5U	5-Thiazoleuridine	5-Thiazoleuracil
pr56U	5,6-Propylene uracil	6,7-dihydro-1H-cyclopenta[d]pyrimidine-2,4(3H,5H)-dione
h456U	4,5,6-trihydrouracil	tetrahydro-4-hydroxy-1H-pyrimidin-2-one
h456UR	(R)-4,5,6-trihydrouracil	(4R)-tetrahydro-4-hydroxy-1H-pyrimidin-2-one
m1Yra	1-Methyl-pseudouracil	N1-methyl-pseudouracil
cnes4T	4-Cyanoethylthiothymidine	4-Cyanoethylthiothymine
allyl9	9-Allylguanine	N9-allyl-8-oxoguanine
m1G	1-Methylguanine	N1-methylguanine
m22G	2,2-Dimethylguanine	N2,N2-dimethylguanine
m2G	2-Methylguanine	N2-methylguanine
m6G	6-Methylguanine	6-O-methylguanine
m7G	7-Methylguanine	N7-methylguanine
m7h8G	7-Methyl 8-dihydroguanine	N7-methyl-8-dihydroguanine
5meC	5-methyl-cytidine	5-methylcytosine
ac4C	4-Acetylcytosine	N4-acetylcytosine
gclamp	G-clamp (9-(aminoetoxy)phenoxazine)	G-clamp
ggclam	G-clamp (9-(guanylethoxy)phonoxazine	guanidino-G-clamp
oh4C	4-N-Hydroxycytosine	4N-Hydroxycytosine
az8A	Azidoadenine	8-azidoadenine
baA	N-benzyl-adenine	N6-benzyladenine
cmpA	N-cyclopropylmethyl-adenine	N6-cyclopropylmethyladenine
cyh6A	6-Cyclohexyladenine	N6-cyclohexyladenine
cyp6A	6-Cyclopentyladenine	N6-cyclopentyladenine
daA	N,N-dimethyl-Adenine	N6,N6-dimethyladenine
e6A	6-Ethyladenine	2-amino-6-etoxypurine
eaA	N-ethyl-adenine	N6-ethyladenine
imprn2	N-(Aminopropyl)imidazoleadenine	2-(1-(3-aminopropyl)imidazole)adenine
m1A	1-Methyladenine	N1-methyladenine
m2nprn	3-(Dimethylamino)propylaminoadenine	N3-(dimethylamino)propylaminoadenine
meA	N-Methyl-Adenine	N6-methyladenine

Sugars

[x] 1',2'-dideoxyribose
[x] Ribose (2,5 connectivity)
[x] 6-FAM (3' end)
[x] Thiol Modifier 6 S-S (3' end)
[x] 2-(methylamino)acetamidate (5' end)
[x] 6-FAM (5' end)
[x] N-acetyl-2-deoxyazaribose
[x] 2-ethyl-2-deoxyribose
[x] Ara-FHNA

Symbol	Old name	New name
12ddR	1',2'-Di-Deoxy-Ribose	1',2'-dideoxyribose
25R	2,5-Ribose	Ribose (2,5 connectivity)
3FAM	3-FAM	6-FAM (3' end)
3SS6	3'-Thiol-Modifier 6 S-S from Glen Research	Thiol Modifier 6 S-S (3' end)
5cGT	2-(methylamino)acetamidate (GeneTools 5'-cap for PMO)	2-(methylamino)acetamidate (5' end)
5FAM	5'-6FAM (6-carboxyflurescein)	6-FAM (5' end)
acn4d	4-Acetylamino-2-deoxyribose	N-acetyl-2-deoxyazaribose
Ae2d	2-alpha-C-ethyl-2-deoxyribose	2-ethyl-2-deoxyribose
afhna	3-ara FHNA	Ara-FHNA

epam / ketcher

Change names of monomers #5323

Peptides

Phosphates

Bases

Sugars