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epam / pipeline-builder

Pipeline Builder is a JavaScript library for visualizing and constructing bioinformatics workflows, using Workflow Description Language (WDL)
http://pb.opensource.epam.com
MIT License
55 stars 12 forks source link

Not handling valid WDL #56

Open coverbeck opened 5 years ago

coverbeck commented 5 years ago

For this valid WDL, the error Unrecognized token on line 102, column 36: snaptools align-paired-end \ ^ when trying it in EPAM Pipeline Builder.

  1. Go to http://pb.opensource.epam.com:10000/
  2. Paste the contents of the above link
  3. Build

This file is WDL 1.0, not sure if that's relevant to this issue.

illusional commented 4 years ago

Hey @coverbeck, I'm not the repo owner but I noticed the same thing. The grammar is fairly out of date, last commit was 10 May, 2017.

I built a new version of the grammar, but couldn't actually get the project properly building to test it.

TimSPb89 commented 4 years ago

Hello @coverbeck, @illusional, that's true WDL v1.0 is not supported by the pipeline builder at the moment. We're currently investigating the possibility to support this feature in the near future and will keep you updated on this.