Open mayanknkchoudhary opened 7 years ago
Hi @mayanknkchoudhary, do you have a sesison link for this issue? thanks.
Don't have the exact same session, but similar: http://epigenomegateway.wustl.edu/browser/?genome=hg19&session=p2GkpebZ2j&statusId=572752709
NHEK track shows two duplicated interactions: chr7 28325000 28350000 chr7:28650000-28675000,2 6353 .
But the file (http://wangftp.wustl.edu/~mchoudhary/human_HiCCUPS/LRI_GSE63525_NHEK_HiCCUPS_looplist_with_motifs.txt.gz) only has one entry (!) as evident from the unix code below:
On the terminal: [mchoudhary@bluemoon:~/public_html/human_HiCCUPS]$ zcat LRI_GSE63525_NHEK_HiCCUPS_looplist_with_motifs.txt.gz | grep chr7 | grep 28325000 chr7 28325000 28350000 chr7:28650000-28675000,2 6353 . chr7 28650000 28675000 chr7:28325000-28350000,2 6354 .
Hope this helps!
Certain entries in the file seem to be (randomly?) duplicated in terms of their display on the browser. In the sense that with the selected entries, there should be only 2 entries in the region. It should contain one interaction between chr11:5010000-5020000 and chr11:5360000-5370000, whereas two interactions show up on the browser track. Attaching a screenshot of the example![here](https://cloud.githubusercontent.com/assets/6150499/20764540/3a9c838a-b6f4-11e6-97a0-64fa360aceb0.png)