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EpiGenome Gateway - WashU EpiGenome Browser
http://epigenomegateway.wustl.edu/legacy/
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duplicated pairwise interaction track entry #51

Open mayanknkchoudhary opened 7 years ago

mayanknkchoudhary commented 7 years ago

Certain entries in the file seem to be (randomly?) duplicated in terms of their display on the browser. In the sense that with the selected entries, there should be only 2 entries in the region. It should contain one interaction between chr11:5010000-5020000 and chr11:5360000-5370000, whereas two interactions show up on the browser track. Attaching a screenshot of the example here

lidaof commented 7 years ago

Hi @mayanknkchoudhary, do you have a sesison link for this issue? thanks.

mayanknkchoudhary commented 7 years ago

Don't have the exact same session, but similar: http://epigenomegateway.wustl.edu/browser/?genome=hg19&session=p2GkpebZ2j&statusId=572752709

NHEK track shows two duplicated interactions: chr7 28325000 28350000 chr7:28650000-28675000,2 6353 .

But the file (http://wangftp.wustl.edu/~mchoudhary/human_HiCCUPS/LRI_GSE63525_NHEK_HiCCUPS_looplist_with_motifs.txt.gz) only has one entry (!) as evident from the unix code below:

On the terminal: [mchoudhary@bluemoon:~/public_html/human_HiCCUPS]$ zcat LRI_GSE63525_NHEK_HiCCUPS_looplist_with_motifs.txt.gz | grep chr7 | grep 28325000 chr7 28325000 28350000 chr7:28650000-28675000,2 6353 . chr7 28650000 28675000 chr7:28325000-28350000,2 6354 .

Hope this helps!