Closed jos4uke closed 6 years ago
hi @jos4uke, did you use the makeDb.sql file directly from our repo? or do you see any error message from apache's error_log file? Thanks.
Hi @lidaof, I used the makeDb.sql from your repo (the one inside the container in /root/eg/config/tair10/).
And here is the log error from apache when I tried to load tair10:
# /var/log/apache2/error.log
subtileKnife starting... >>>>>
cgi param parsed
done
subtileKnife starting... >>>>>
cgi param parsed
Hooked to tair10
fetching genome info...
done
subtileKnife starting... >>>>>
cgi param parsed
Hooked to tair10
Table 'tair10.scaffoldRuntime' doesn't exist
Table 'tair10.scaffoldRuntime' doesn't exist
# /var/log/apache2/error.log
And here is the log error from apache when I tried to load Gmax_189:
# /var/log/apache2/error.log
subtileKnife starting... >>>>>
cgi param parsed
done
subtileKnife starting... >>>>>
cgi param parsed
Hooked to Gmax_189
fetching genome info...
done
subtileKnife starting... >>>>>
cgi param parsed
Hooked to Gmax_189
Table 'Gmax_189.scaffoldRuntime' doesn't exist
Table 'Gmax_189.scaffoldRuntime' doesn't exist
All errors seem related to a missing *.scaffoldRuntime table.
Hi @lidaof ,
I found the missing step in database setup. I had to apply sessionUtils.sql and it fixes the previous javascript error.
# inside the container
cat /root/eg/config/sessionUtils.sql | mysql -uroot -proot tair10
Then, I succeeded to access tair10 in the browser.
Great, @jos4uke , yeah, the error_log explained the reason. Glad you figured it out.
Hi
I tried to add a new genome using epgg/eg docker image for test purposes. I used the wiki doc here: http://wiki.wubrowse.org/Add_a_private_genome I followed the instructions to add Gmax_189 genome but I ended up with an error. Then, I tried to add tair10 but again I got the same error.
Here are the commands I executed inside the docker image to add tair10:
Here is a screenshot:![washu_epigenome_browser_tair10_bug](https://user-images.githubusercontent.com/1325049/37727971-59e1c298-2d39-11e8-9c03-df1c257a0595.png)
Could you help me fix this?
Regards,
Joseph