Docker version don't load genome annotations

[mthjwu]

I just downloaded the docker image of the browser. It runs well, but can't load in genome annotations.

Here is how it looks:

Here is apache log I got:

root@9010c885452b:~# more /var/log/apache2/error.log [Thu Sep 06 17:03:27.024453 2018] [mpm_event:notice] [pid 1708:tid 140174867167104] AH00489: Apache/2.4.1 8 (Ubuntu) configured -- resuming normal operations [Thu Sep 06 17:03:27.024548 2018] [core:notice] [pid 1708:tid 140174867167104] AH00094: Command line: '/u sr/sbin/apache2' subtleKnife starting... >>>>> cgi param parsed done subtleKnife starting... >>>>> cgi param parsed Hooked to hg19 fetching genome info... done subtleKnife starting... >>>>> cgi param parsed Hooked to hg19 reviveScaffold() done normal dsp... runmode: 0, jux tk: not available not jumping... not moving... setDspBoundary: chr7 27053398 chr7 27373766 chromSl made... entire length computed: 320368... finalizeDsp_genome()... entire length computed: 320368... computing summary size (might truncate dsp) expected 990... total # of summarySize exhausted (expecting 990, 990 left)... summary size computed, 990 used in total... moveBoundary_genome distance: 320368 spnum: 990 spsize: 323.604040 moveBoundary_genome distance: 320368 spnum: 990 spsize: 323.604040 entire length computed: 961104... showRegionSl: usedSummaryNumber: 2970 entireLength: 961104 (0) chr7 [0,26733030 >> 27694134,159138663] len: 961104 sp:2970 viewStart: chr7 27053398 track sl made done subtleKnife starting... >>>>> cgi param parsed Hooked to hg19 subtleKnife starting... >>>>> cgi param parsed Hooked to hg19 reviveScaffold() done normal dsp... runmode: 0, jux tk: not available not jumping... not moving... entire length computed: 961104... showRegionSl: usedSummaryNumber: 2970 entireLength: 961104 (0) chr7 [0,26733030 >> 27694134,159138663] len: 961104 sp:2970 reviveScaffold() done normal dsp... runmode: 0, jux tk: not available not jumping... not moving... entire length computed: 961104... showRegionSl: usedSummaryNumber: 2970 entireLength: 961104 (0) chr7 [0,26733030 >> 27694134,159138663] len: 961104 sp:2970 tabix file error: http://egg.wustl.edu/d/hg19/refGene.gz track sl made done tabix file error: http://egg.wustl.edu/d/hg19/rmsk_all.gz track sl made done

Seems the error caused by the tabix files, but they are right there.

[mackeyja]

Following these steps got annotations working for me: http://wiki.wubrowse.org/V42:_bigWig_and_bigBed_support_with_libBigWig

[lidaof]

Hi @mthjwu , glad you figured out, you can also change http to https in the tracks.json file, I will also update the docker image too.