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epi2me-labs / modbam2bed

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how to deal with many bam files #31

Closed Aline-Git closed 2 years ago

Aline-Git commented 2 years ago

Hello,

Thanks for this very useful tool !

I should I proceed if I have many (e.g. 308) bam files ? It will be complicated to put them all in a command line. Should I merge them first ?

Aline

cjw85 commented 2 years ago

Running a samtools merge will be notionally equivalent to providing modbam2bed all of the files at once. Take your pick! 😄

Aline-Git commented 2 years ago

Thanks, it should be fast to choose :)