Why are the settings that allow for canonical and modified thresholds being removed?
I think this is a great feature and allows for one to set thresholds like "non-meth < 0.2 and meth > 0.8" which allows for ambiguous calls to be ignored.
With the new --threshold argument, how would I parse a modbam to produce something giving me "non-meth < 0.2 and meth > 0.8?"
cjw85
commented
1 year ago
Why are the settings that allow for canonical and modified thresholds being removed?
I think this is a great feature and allows for one to set thresholds like "non-meth < 0.2 and meth > 0.8" which allows for ambiguous calls to be ignored.
With the new
--thresholdargument, how would I parse a modbam to produce something giving me "non-meth < 0.2 and meth > 0.8?"