search

epi2me-labs / modbam2bed

Other
47 stars 8 forks source link

visualize in IGV #62

Closed sujunhao closed 1 year ago

sujunhao commented 1 year ago

Thank you for creating this tool. I am currently trying to visualize the "bedMethyl" file generated from modbam2bed in IGV version 2.13.2.

However, when I try to load the file into IGV, I encounter an error message that says, "Error loading .... Error parsing line: chr20 60008 5mc 1000 + ....", I am wondering how I can resolve this problem.

Thanks in advance for your assistance.

JH

cjw85 commented 1 year ago

modbam2bed is deprecated, please use: https://github.com/nanoporetech/modkit/