epi2me-labs / modbam2bed

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Methylation bed file output cols - Coming as 18 , description available only for 16 in readme #71

Closed snehaleela closed 6 months ago

snehaleela commented 6 months ago

Below is the output coming from the command: modkit pileup --cpg --threads 16 --ref GCA_000001405.15_GRCh38_no_alt_plus_hs38d1_analysis_set.fna sample.cram sample.cpg.bed

image (1)

Even considering the "Included in extended output only".. There are still 2 more cols which we dont have the description for.

Can you guys tell us where these 2 cols description or any issue in the generation.

cjw85 commented 6 months ago

This repository is now unsupported and we do not recommend its use. Please contact Oxford Nanopore: support@nanoporetech.com for help with your application if it is not possible to upgrade.

We have a new bioinformatic resource that replaces the functionality of this project! See our new repository here: modkit.