Closed snehaleela closed 6 months ago
This repository is now unsupported and we do not recommend its use. Please contact Oxford Nanopore: support@nanoporetech.com for help with your application if it is not possible to upgrade.
We have a new bioinformatic resource that replaces the functionality of this project! See our new repository here: modkit.
Below is the output coming from the command: modkit pileup --cpg --threads 16 --ref GCA_000001405.15_GRCh38_no_alt_plus_hs38d1_analysis_set.fna sample.cram sample.cpg.bed
Even considering the "Included in extended output only".. There are still 2 more cols which we dont have the description for.
Can you guys tell us where these 2 cols description or any issue in the generation.