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epi2me-labs / pychopper

cDNA read preprocessing
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Primers/Adapters for kit SQK-LSK112 or SQK-NBD112-96 #56

Closed NikoLichi closed 6 months ago

NikoLichi commented 8 months ago

Hi there,

Similar to issue #47, I would like to use Pychopper for some sequences produced with the kit type SQK-NBD112-96, which, as far as I understood, belongs to the kit SQK-LSK112.

I already tried Pychopper but had this error: pychopper: error: argument -k: invalid choice: 'NBD112' (choose from 'PCS109', 'PCS110', 'PCS111', 'LSK114')

Then, I looked for information/documentation to obtain the VNP and SSP sequences but did not find them.

Could someone please help me to know which sequences I need to specify in the -k argument?

All the best Niko

nrhorner commented 7 months ago

Hi @NikoLichi

I don't believe NBD112 is an official kit for cDNA, which is the data Pychopper deals with. Could you tell me more about what you are trying to achieve?

Thanks,

Neil

nrhorner commented 6 months ago

Closing from lack of response