How to pull a previous version of the workflow?

irc47 commented 5 months ago

Ask away!

Hi All, I am looking to run a previous version of the workflow for reproducibility. Can anyone provide guidance on how to pull a specific version with nextflow? Thank you!

julibeg commented 5 months ago

Hi @irc47, on the command line, you can add -r vX.Y.Z to your command.

For instance, the wf-16s example command would then be

nextflow run epi2me-labs/wf-16s \ 
    --fastq 'wf-16s-demo/test_data' \ 
    --minimap2_by_reference \
    -r v1.1.3

for version 1.1.3.

In the EPI2ME Desktop Application, you can click the "Switch revision" button in the workflow's Overview page to choose a different version.

irc47 commented 5 months ago

Thank you!

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From: Julian Libiseller-Egger @.> Sent: Tuesday, June 11, 2024 5:20:51 AM To: epi2me-labs/wf-16s @.> Cc: Ilana Cohen @.>; Mention @.> Subject: [EXTERNAL]Re: [epi2me-labs/wf-16s] How to pull a previous version of the workflow? (Issue #19)

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Hi @irc47https://github.com/irc47, on the command line, you can add -r vX.Y.Z to your command.

For instance, the wf-16s example command would then be

nextflow run epi2me-labs/wf-16s \ --fastq 'wf-16s-demo/test_data' \ --minimap2_by_reference \ -r v1.1.3

for version 1.1.3.

In the EPI2ME Desktop Application, you can click the "Switch revision" button in the workflow's Overview page to choose a different version.

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epi2me-labs / wf-16s

How to pull a previous version of the workflow? #19

Ask away!