Error when making report

Hi, I had a problem running the demo data. Please see the error message below. Do you know how to solve this problem? Thanks, Yanchun

Error executing process > 'kraken_pipeline:makeReport (1)'

Caused by: Process kraken_pipeline:makeReport (1) terminated with an error exit status (1)

Command executed:

workflow-glue report "wf-16s-report.html" --workflow_name wf-16s --versions versions --params params.json --read_stats read_stats/* --lineages lineages --abundance_table "abundance_table_genus.tsv" --taxonomic_rank "G" --pipeline "kraken2" --abundance_threshold "1" --n_taxa_barplot "8"

Command exit status: 1

Command output: (empty)

Command error: [15:02:34 - workflow_glue] Starting entrypoint. Traceback (most recent call last): File "/hpc/users/zhangy40/.nextflow/assets/epi2me-labs/wf-16s/bin/workflow-glue", line 7, in cli() File "/hpc/users/zhangy40/.nextflow/assets/epi2me-labs/wf-16s/wf-metagenomics/bin/workflow_glue/init.py", line 72, in cli args.func(args) File "/hpc/users/zhangy40/.nextflow/assets/epi2me-labs/wf-16s/wf-metagenomics/bin/workflow_glue/report.py", line 114, in main SeqSummary(args.read_stats) File "/hpc/users/zhangy40/schzrnas/softwares/conda/env/nf16s/lib/python3.10/site-packages/ezcharts/components/fastcat.py", line 47, in init df_all = load_stats(seq_summary, format='fastcat') File "/hpc/users/zhangy40/schzrnas/softwares/conda/env/nf16s/lib/python3.10/site-packages/ezcharts/components/fastcat.py", line 337, in load_stats if os.path.isdir(stat): File "/hpc/users/zhangy40/schzrnas/softwares/conda/env/nf16s/lib/python3.10/genericpath.py", line 42, in isdir st = os.stat(s) TypeError: stat: path should be string, bytes, os.PathLike or integer, not list

Work dir: /sc/arion/projects/schzrnas/zhangy40/intratumor_bacteria/010324_16s/processed/demulti_trim/work/5b/2ac0627b4dd170ec04b2b94b1186b8

Tip: when you have fixed the problem you can continue the execution adding the option -resume to the run command line

epi2me-labs / wf-16s

Error when making report #5