Would it be possible to specify the output directory in the command? This could be useful when running the workflow multiple times within a directory (e.g. on subdirectories) without having intermediate directory renaming steps.
Describe alternatives you've considered
intermediate steps of renaming the output directory to include sample set names or dates
Is your feature related to a problem?
Not related to a problem
Describe the solution you'd like
Would it be possible to specify the output directory in the command? This could be useful when running the workflow multiple times within a directory (e.g. on subdirectories) without having intermediate directory renaming steps.
Describe alternatives you've considered
intermediate steps of renaming the output directory to include sample set names or dates
Additional context
No response