Wrong description of sample sheet CSV

epi2me-labs / wf-alignment

Other

23 stars 16 forks source link

Wrong description of sample sheet CSV #2

Closed ulbivin closed 2 years ago

ulbivin commented 2 years ago

Hi,

It seems the description of the sample sheet CSV file is wrong. It says to contain three columns: CSV file with columns named barcode, sample_name and type. Permissible if passing a directory containing barcodeXX sub-directories. but this gives an error: OSError: Could not parse sample sheet, it must contain two columns named 'barcode' and 'sample_id' or 'alias'.

sarahjeeeze commented 2 years ago

Thanks for pointing this out, I will amend this in the upcoming release.