Question about Map long cDNA reads

epi2me-labs / wf-alignment

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Question about Map long cDNA reads #25

Closed YIGUIz closed 4 months ago

YIGUIz commented 6 months ago

Ask away!

Hello, I'm working on aligning cDNA RNA-seq ONT data. I noticed that the "--minimap_preset rna" parameter is designed for Nanopore Direct RNA-seq. Do I need to adjust the code in the Nextflow script for my datasets?

julibeg commented 6 months ago

Hi @YIGUIz,

There's no need to change the code. You can provide arguments to be passed to minimap2 with the --minimap_args parameter (please note that this will override any preset arguments though).