feat: allow use of latest nextclade v3 tree with v2 binary

epi2me-labs / wf-artic

ARTIC SARS-CoV-2 workflow and reporting

https://labs.epi2me.io/

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feat: allow use of latest nextclade v3 tree with v2 binary #109

Closed corneliusroemer closed 7 months ago

corneliusroemer commented 8 months ago

Workaround for #107 while pipeline is still using the v2 binary Nextclade v2 can use the latest tree that is part of v3 datasets and therefore keep getting the latest lineages.

To enable, one just needs to pass a new parameter $params.use_latest_nextclade_v3_tree