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epi2me-labs / wf-artic

ARTIC SARS-CoV-2 workflow and reporting
https://labs.epi2me.io/
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Naming convention #30

Closed Ceres90 closed 2 years ago

Ceres90 commented 2 years ago

What is the naming convention of the barcode folders allowed to be, I would like to name them something besides just barcode01 but it seems to cause an issue when i do?

mattdmem commented 2 years ago

Thanks @Ceres90, the tool is designed to be run on the output of MinKNOW/guppy, which places reads into barcode folders in the format barcodeXX. Because this workflow is tied to this output style there is no plan at the moment to support barcode directories called anything else.

You can always call the directories what you like and use soft links to recreate the structure that the workflow expects?