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epi2me-labs / wf-artic

ARTIC SARS-CoV-2 workflow and reporting
https://labs.epi2me.io/
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Not recognising sample sheet in macbookpro #44

Closed adamkoletis closed 2 years ago

adamkoletis commented 2 years ago

Hi, I am trying to run the pipeline in Macbookpro which is successfully running. But after several tries, I am not able to make it recognize the sample sheet. I have transformed the sample sheet in txt, CSV, and exec files but with no success. Please do you have to suggest me something? Screenshot 2022-03-23 at 12 23 19

mattdmem commented 2 years ago

Hi Adam,

What do you mean it's not recognised? Your samples don't get renamed? Can you share you sample sheet on here?

Thanks

Matt

adamkoletis commented 2 years ago

Hi Matt, I mean that during the running of the pipeline Under the input-output field I don't see the sample sheet and then the process check sample sheet does not appear. Further, I am attaching the txt format of the sample sheet that I have used sample_sheet_run003.txt

.

mattdmem commented 2 years ago

Thanks Adam,

I can only think that it's something to do with your sample sheet location? permissions? path? I'll double check but I'm not sure it's an issue on our end.

Matt

mattdmem commented 2 years ago

Hi Adam,

Can I close this issue now - are you still having problems?

Matt

adamkoletis commented 2 years ago

Hi yes, please. Apologize but just right now I've got informed that everything is fine. Thanks